The planning of aquatic ecosystem protection and restoration planning in Dongjiangyuan involves a large area and complex treatment problems. According to the principles of adjust measures to local conditions, firstly we do the treatments in water and soil loss, damaged water ecosystems. After systematic analysis about existing problems, we take both structural measures and non-structural measures to solve the emphasized problems such as ecological resources degeneration, water pollution, and drinking water security. Through the various water ecosystem protection measures, we devoted to create a sustainable development mode in Dongjiangyuan Area.